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Title: Utility of computer simulations in landscape genetics

Author: Epperson, Bryan K.; McRae, Brad H.; Scribner, Kim; Cushman, Samuel A.; Rosenberg, Michael S.; Fortin, Marie-Josee; James, Patrick M. A.; Murphy, Melanie; Manel, Stephanie; Legendre, Pierre; Dale, Mark R. T.

Date: 2010

Source: Molecular Ecology. 19: 3549-3564.

Publication Series: Journal/Magazine Article (JRNL)

Description: Population genetics theory is primarily based on mathematical models in which spatial complexity and temporal variability are largely ignored. In contrast, the field of landscape genetics expressly focuses on how population genetic processes are affected by complex spatial and temporal environmental heterogeneity. It is spatially explicit and relates patterns to processes by combining complex and realistic life histories, behaviours, landscape features and genetic data. Central to landscape genetics is the connection of spatial patterns of genetic variation to the usually highly stochastic space-time processes that create them over both historical and contemporary time periods. The field should benefit from a shift to computer simulation approaches, which enable incorporation of demographic and environmental stochasticity. A key role of simulations is to show how demographic processes such as dispersal or reproduction interact with landscape features to affect probability of site occupancy, population size, and gene flow, which in turn determine spatial genetic structure. Simulations could also be used to compare various statistical methods and determine which have correct type I error or the highest statistical power to correctly identify spatio-temporal and environmental effects. Simulations may also help in evaluating how specific spatial metrics may be used to project future genetic trends. This article summarizes some of the fundamental aspects of spatial-temporal population genetic processes. It discusses the potential use of simulations to determine how various spatial metrics can be rigorously employed to identify features of interest, including contrasting locus-specific spatial patterns due to microscale environmental selection.

Keywords: individual-based models, landscape ecology, population genetics, simulations, spatial statistics

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  • This article was written and prepared by U.S. Government employees on official time, and is therefore in the public domain.

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Epperson, Bryan K.; McRae, Brad H.; Scribner, Kim; Cushman, Samuel A.; Rosenberg, Michael S.; Fortin, Marie-Josee; James, Patrick M. A.; Murphy, Melanie; Manel, Stephanie; Legendre, Pierre; Dale, Mark R. T. 2010. Utility of computer simulations in landscape genetics. Molecular Ecology. 19: 3549-3564.

 


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