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Title: YouGenMap: a web platform for dynamic multi-comparative mapping and visualization of genetic maps

Author: Batesole, Keith; Wimalanathan, Kokulapalan; Liu, Lin; Zhang, Fan; Echt, Craig S.; Liang, Chun;

Date: 2014

Source: Frontiers in Genetics

Publication Series: Scientific Journal (JRNL)

Description: Comparative genetic maps are used in examination of genome organization, detection of conserved gene order, and exploration of marker order variations. YouGenMap is an open-source web tool that offers dynamic comparative mapping capability of users' own genetic mapping between 2 or more map sets. Users' genetic map data and optional gene annotations are uploaded, either publically or privately, as long as they follow our template which is available in several standard file formats. Data is parsed and loaded into MySQL relational database to be displayed and compared against users' genetic maps or other public data available on YouGenMap. With the highly interactive GUIs, all public data on YouGenMap are maps available for visualization, comparison, search, filtration and download. YouGenMap web tool is available on the website (http://conifergdb.miamioh.edu/yougenmap) with the source-code repository at (http://sourceforge.net/projects/yougenmap/?source=directory).

Keywords: YouGenMap, genetic map, genetic map viewer, genetic marker, graphic user interface

Publication Notes:

  • We recommend that you also print this page and attach it to the printout of the article, to retain the full citation information.
  • This article was written and prepared by U.S. Government employees on official time, and is therefore in the public domain.

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Citation:


Batesole, Keith; Wimalanathan, Kokulapalan; Liu, Lin; Zhang, Fan; Echt, Craig S.; Liang, Chun 2014. YouGenMap: a web platform for dynamic multi-comparative mapping and visualization of genetic maps. Frontiers in Genetics, Vol. 5: e19315-. 3 P.  doi: 10.3389/fgene.2014.00183

 


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